The molecular dynamics courses at NHR@FAU introduce widely used simulation packages – GROMACS and AMBER – and cover setup, execution, and analysis workflows on HPC clusters. These courses support researchers in structural biology, computational chemistry, and related fields who use NHR@FAU resources for their simulations.
- GROMACS for Constant-pH Simulations
Advanced two-day course on constant-pH molecular dynamics simulations using lambda-dynamics in GROMACS. - Introduction to GROMACS
Multi-day introduction to the GROMACS molecular dynamics engine covering simulation setup, execution, and trajectory analysis of biomolecular systems.
For an overview of all NHR@FAU courses, visit the course overview page.